CDS

Accession Number TCMCG057C44147
gbkey CDS
Protein Id XP_018451396.1
Location complement(join(6629887..6631510,6631580..6631734,6631824..6631946,6632029..6632499,6632580..6632660))
Gene LOC108822738
GeneID 108822738
Organism Raphanus sativus

Protein

Length 817aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018595894.1
Definition PREDICTED: protein SMG7L-like [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Est1 DNA/RNA binding domain
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14409        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03015        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0000184        [VIEW IN EMBL-EBI]
GO:0000723        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005697        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006278        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007004        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010833        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0032200        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0042162        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043021        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043487        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0060249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070034        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071897        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAGCTTCTACTAGAAAATCACCCAAGAGTAATGCAAATTCAGCTCATCAGAAACAGAATCCTAATGTTCTTGTAGAGGTGAACAACATAGAGAAACAGCTATGGACATTAATCCACTCAAAAGGCATATTACATCCAGATGTTTCAGAACTATACGCTAAATCAAGTTCCACCTACGAGCAAATCTTTAAAAGCAATCTCAAACAAGAAGTGCTTCAAGAAGTTGAGTTCTGTCTCTGGAAACTTCACTATAAACACATAGACGAGTTCCGTAAAGGCGTCAAGACAGATGATCCTGCCAAGCGAGGCACTCATACGAAAGCATTCAAGATGTTTCTCTTAAGAGCGGTTGACTCTTATAAGAATCTGATCTCCAAAGTTGAGAAATCTGGATTCTTATCCCATCGTTTCTATATCTGTCTTGGAGATCTTGAAAGGTACAAAGAACAGTATCTGAAAACACATGAGCATCCTAATTGGTCAACTGCAGCTACATACTATCGTGAAGCTGCAAAATCTTGGCCTGGTAGTGGCAATCCTCATAACCAGCTAGCTGTGTTGGCTACTTATGTTGGTGATGAGTTCTTGGCTCTGTACCATTGTGTGAGAAGCTTAGCTGTAAAAGAACCTTTCCCTGGTGCTTCCAACAATCTTCTTCTGTTGTTTGAGAAGAACAGGTCTTCTCAGTTGCAGTCTCTCTCTACCGATGCAGAGTTTAACTTCTTAAACCCATCAGAGAGGAATGTTACTCTGAAGGACTCAATGACTGGAACTGACTTATGGTCACTGGTGGTTCGAACTATTAGCTTCTTTTACCTTAAATCCAGTTTTGATGACTTCGATTGCACGTTTGCATCAACTATGAGAGAAATGGATGCAGCGTTTGCAGCAGATGATAGGAACCTAGAAGCCATGTTGGAGTCATATCAAGTCATGGACTCAACGAGAAAGGGACCTTATAGAATCCTCCAACTTGTTGCGGTTTTCATCTTCATCTTCCACGGTTCATCCGAGTTTAACGAATCAGACAAGGCTAAAGAGGAAGTAAAGCTAACAAACTTAGCCTTGACGATGGCGTTCATCGTCATGGGGAGAGTTGTTGAGAGATGTTTGAAGTCAAGTCCCTTGGATTCCTGCCCTCTCTTACCTGCTCTACTTGTGTTTCTAGACTACTCACCCTTTCTGCTTGAAAAGACAGAAGAAGGAGAATACAGGTTTGATGAGAAGAGTGAGATTGCAATATCATACTTCTTTGGCAAACTTGTTGATCTCTTGAACCAGTTAAAGGTGGAAGGCCAAAACTGTTGTGCTCTTTGGGAGGATCATGAACTGAGGTCCTTGTCTCCTCTGGCTCCTATACATCTGCTTCTAGATTTCTCAAGTCATATGGATCTGAGAGAGGGTTTTGATAGAGGGAAAGAGATTCGTCTTCAACGGATTTTAAATTCCGCTATTAGGTTCTCAAGTAGACGAAAGAAGAGTACTCAAAAGTGGTTATTCCTTGACAAGCAAGGGACTTGGTCCTACTCAAATGAAGAGGGAAGTAACAGAACATGTGTTGAGAGTGAGAGTGAAAGATCTGTGCCTGCAGAAGAGGAAGAAGTCATTCTTCTCAAGCCGCTTGTAAGGAGTCAATCTGCTCCAATCTATTCTTCTTGCATTGCAACAAAGCCGCTCAGCTCGGATAACAAAACTTTACCTGATGAAAGCATAAGACGTGCCTCATCACTCATTGTGAACCACCATAGCACACATGAGACTAACTTCAGCTTCACGCAAGGTCTTAAGAACACGGAACCGCAGCTAGAAGAAGGCACAGTCTCAGGAAGACCTCCATCACTAAGCGGGTGGGTGGTTGACAAGAAGGAAGAGAATGGAGGAGTAAGTAATCCAAAAGGGTTAAGCAGTATTGATGAGACAAGTCCTGTCACATCCTTTGATAGTCTCTCAACTTCTTTATATTCACCTCCTACTCCATCTGCTCCATTACTTCCTGAAGACGCTTCTTGGTTTCATAATGGAGTTAGTACGCAAGCAGAGACAGAGAGCTCCAGTTTCATAAATTCATACACAAACCCGCCACTTGTTGGGATGTCTTCTTCTGAGTGGTTACGCAGGTACAGACAGAGTAGGAATGTTGGACCAGCCTATTCCTATCATCAAGCTCAGGGGACAGACAATCTGAGGAACTTCTTGGCTCATGGGTCTTCCAAGTTCAGTCTCTTAGCAATGTACGGTACACCAAATGATCAATCGATGATCACTTCTGAAAACTCATTGTTTCATCCTCACCTTTACAATGAAACTAGAGGAGAGAAGCTCTGCAACGGTCTAGAAAGTACAAGAAACGCTTATGGATTCAGTGATGATCCTGGACCGTTTCTTCGGTACTTGAGAGAGAAAGAGTGGCTGAATGAGAATGGTGAGAGGTTAAGAGAAGGTTGTAAGTGA
Protein:  
MEASTRKSPKSNANSAHQKQNPNVLVEVNNIEKQLWTLIHSKGILHPDVSELYAKSSSTYEQIFKSNLKQEVLQEVEFCLWKLHYKHIDEFRKGVKTDDPAKRGTHTKAFKMFLLRAVDSYKNLISKVEKSGFLSHRFYICLGDLERYKEQYLKTHEHPNWSTAATYYREAAKSWPGSGNPHNQLAVLATYVGDEFLALYHCVRSLAVKEPFPGASNNLLLLFEKNRSSQLQSLSTDAEFNFLNPSERNVTLKDSMTGTDLWSLVVRTISFFYLKSSFDDFDCTFASTMREMDAAFAADDRNLEAMLESYQVMDSTRKGPYRILQLVAVFIFIFHGSSEFNESDKAKEEVKLTNLALTMAFIVMGRVVERCLKSSPLDSCPLLPALLVFLDYSPFLLEKTEEGEYRFDEKSEIAISYFFGKLVDLLNQLKVEGQNCCALWEDHELRSLSPLAPIHLLLDFSSHMDLREGFDRGKEIRLQRILNSAIRFSSRRKKSTQKWLFLDKQGTWSYSNEEGSNRTCVESESERSVPAEEEEVILLKPLVRSQSAPIYSSCIATKPLSSDNKTLPDESIRRASSLIVNHHSTHETNFSFTQGLKNTEPQLEEGTVSGRPPSLSGWVVDKKEENGGVSNPKGLSSIDETSPVTSFDSLSTSLYSPPTPSAPLLPEDASWFHNGVSTQAETESSSFINSYTNPPLVGMSSSEWLRRYRQSRNVGPAYSYHQAQGTDNLRNFLAHGSSKFSLLAMYGTPNDQSMITSENSLFHPHLYNETRGEKLCNGLESTRNAYGFSDDPGPFLRYLREKEWLNENGERLREGCK